I have come across something and I am not sure what to do with it at this point. I am running SCVMM 2016 version 4.0.2314.0 and I am running into an issue with my 14 2012 R2 Core servers. I package the updates through SCVMM on a quarterly basis, so I have 2018 Q3, 2018 Q2, etc. I ran a compliance scan on all of these hosts and 6 show as non-compliant while the others show as compliant. This doesn't make sense because they should all be non-compliant for the updates that were released in September.
I have other 2016 hosts and those worked without an issue. These have worked in the past without an issue. I tried to do a rescan and they still show compliant. I verified that the baseline is deployed to all of these servers. I haven't tried rebooting the server that is an issue yet because these handle small remote sites and therefore are not in any form of HA. I plan on rebooting tonight.
Anyone else experience this issue or have any suggestions on what to try? Any assistance in appreciated.